Journal: Breeding Science

Article Title: Development of SNP genotyping assays for heading date in rice

doi: 10.1270/jsbbs.23093

Figure Lengend Snippet: A brief genotyping workflow using the assays.

Article Snippet: Genotyping of these DNA samples with SNP genotyping assays was performed on the 96.96 Dynamic Array IFC (96.96 IFC) chip according to the “SNPtype 96×96 v1” protocol supplied by Fluidigm Inc., except that the standard number of additional cycles after touchdown PCR was reduced from 34 to 30.

Techniques:

Journal: Breeding Science

Article Title: Development of SNP genotyping assays for heading date in rice

doi: 10.1270/jsbbs.23093

Figure Lengend Snippet: Chromosome locations of the 41 loci (29 genes and 12 QTLs) targeted in rice genotyping assays. Scale in Mb (‘Nipponbare’ IRGSP-1.0) is indicated on the left. The 29 genes are listed under “Gene name” in . The 12 QTLs are listed under “QTL number” in . The superscript at the end of each locus label indicates the number of assays used for the locus. Centromeres are indicated by a rhombus on each chromosome.

Article Snippet: Genotyping of these DNA samples with SNP genotyping assays was performed on the 96.96 Dynamic Array IFC (96.96 IFC) chip according to the “SNPtype 96×96 v1” protocol supplied by Fluidigm Inc., except that the standard number of additional cycles after touchdown PCR was reduced from 34 to 30.

Techniques:

Journal: Breeding Science

Article Title: Development of SNP genotyping assays for heading date in rice

doi: 10.1270/jsbbs.23093

Figure Lengend Snippet: Distribution of alleles at 41 loci in 377 cultivars. The data were obtained in the developed genotyping assays.

Article Snippet: Genotyping of these DNA samples with SNP genotyping assays was performed on the 96.96 Dynamic Array IFC (96.96 IFC) chip according to the “SNPtype 96×96 v1” protocol supplied by Fluidigm Inc., except that the standard number of additional cycles after touchdown PCR was reduced from 34 to 30.

Techniques:

Journal: Ecology and Evolution

Article Title: Low rates of hybridization between European wildcats and domestic cats in a human‐dominated landscape

doi: 10.1002/ece3.3650

Figure Lengend Snippet: Individual membership values ( q ( i ) ) for wildcats and domestic cats with SNP and microsatellite genotypes generated using Hybridlab and analyzed using Structure (a) and NewHybrids (b). Displayed are also the Median and the q ( i ) ‐values corresponding to simulated categories

Article Snippet: The roadkill samples, as well as all available hair samples that could not be assigned using NewHybrids and provided sufficient material for an additional analysis ( n = 53), were analyzed with a 96 genomewide SNP panel (SNPtype genotyping assays, Fluidigm, San Francisco, CA, USA) on a 96.96 Dynamic Array Chip for Genotyping (Fluidigm), as developed by Nussberger, Wandeler, & Camenisch, , which allows to simultaneously genotype 96 SNP loci in 96 samples.

Techniques: Generated